| ID | Title | Section/Topic | Authors | Keywords |
|---|
| 665 | Absolute dosage and functional diversification drive majority of gene retention following polyploidy in the Compositae | Genomics / Proteomics | Sessa, Emily; Barker, Michael. | Asteraceae
dosage balance hypothesis
neofunctionalization
subfunctionalization
absolute dosage
paleopolyploidy
functional divergence of gene duplicates
gene ontology (GO) |
| 426 | Characterizing Biochemical Phenotypes through a Metabolite Analysis Platform: Research Communication Enabled through Public Ontologies and Controlled Vocabularies | Genomics / Proteomics | Eilers, Robert J.. | metabolite analysis
Ontology
controlled vocabulary
analytical biochemistry
biochemical phenotypes |
| 676 | Comparative genomics and lineage specific gene expression in the genus Linum. | Genomics / Proteomics | Galindo, Leonardo; McDill, Joshua; Wong, Gane Ka-Shu; Deyholos, Michael. | Malpighiales
Illumina
RNA-Seq
genome
transcriptome |
| 511 | Comparative genomics of Brassicales plastomes | Genomics / Proteomics | Tang, Michelle; Edger, Patrick; Pires, Joseph. | de novo assembly
Comparative methods
Chloroplast DNA
genome evolution |
| 366 | Copy number and expression of chloroplast and nuclear genes belonging to the Photosystem II and Calvin cycle throughout different ploidy levels in Leucanthemum (Compositeae, Anthemideae) | Genomics / Proteomics | Talianova, Martina; Griesenbeck, Joachim; Oberprieler, Christoph. | Polyploidy
expression
Gene duplications |
| 760 | Development of pentatricopetide repeat (PPR) markers for Penstemon using data from whole genome shotgun sequencing | Genomics / Proteomics | Wenzel, Aaron; Blischak, Paul; Wolfe, Andrea. | pentatricopeptide repeats
marker development
Penstemon
Plantaginaceae
genome skimming |
| 962 | Evolution of Mitogen Activated Protein Kinase Kinase (MAPKK) Gene Family in Plants | Genomics / Proteomics | MacArthur , Kenton ; Murray, Kevin; Neupane, Achal; Benson, Benjamin; Piya, Sarbottam; Nepal, Madhav. | MAPK genes
gene family
gene duplication
Evolutionary divergence
paralogous genes |
| 775 | Genome-enabled phylogeography in Asclepias cryptoceras (Apocynaceae) | Genomics / Proteomics | Weitemier, Kevin; Straub, Shannon; Fishbein, Mark; Cronn, Richard; Liston, Aaron. | Asclepias
Apocynaceae
Target Enrichment
Hybridization sequencing
SNP
Next-generation sequencing
Phylogeography
Population genomics |
| 369 | How low can you go? Gene predictions and putative annotations in four species of Penstemon (Plantaginaceae) from ultra low coverage 454 sequencing | Genomics / Proteomics | Blischak, Paul; Wenzel, Aaron; Stevens, Mikel; Wolfe, Andrea. | sequence annotation
marker development
Plantaginaceae
Penstemon
nuclear markers
pentatricopeptide repeats
MAKER annotation pipeline |
| 298 | Redefining the Pseudoautosomal region boundaries of Carica papaya X chromosome | Genomics / Proteomics | Lappin, Fiona; Medert, Charles; Mardonovich, Sandra; Wu, Meng; Moore, Richard. | |
| 434 | Searching for alternative splicing candidate genes using next-generation sequencing in Tragopogon (Asteraceae) | Genomics / Proteomics | Liu, Xiaoxian; Soltis, Pamela; Soltis, Douglas; Barbazuk, W. Brad. | Polyploidization
Tragopogon
RNA alternative splicing
Next-generation sequencing
PicBio error correction. |
| 708 | Structural evolution of mitochondrial genomes in early diverging algal lineages | Genomics / Proteomics | Allen, Jessica; Mccourt, Richard; Karol, Kenneth. | mitochondrial genome
prasinophyte
Chlorophyta
Algae
Inverted repeat
Phylogenomics |
| 581 | The investigation on protein evolution of Y chromosome in Carica papaya | Genomics / Proteomics | Wu, Meng; Moore, Richard. | sex chromosomes
Carica papaya
protein evolution |
| 651 | Time after time: Comparing homeolog expression patterns between two independent origins of the allotetraploid fern Polypodium hesperium | Genomics / Proteomics | Sigel, Erin; Der, Joshua; DE PAMPHILIS, CLAUDE W; Pryer, Kathleen. | fern
hybrid
next generation sequencing
polyploidy
Phylogenomics
Polypodium
reticulation
RNA-Seq
allopolyploidy |
